working with kolmogrov test

 Hi, I am trying to use kolmogorov test which I' going to use it in my artickle , I generate a data set A then I randomly made a sample set from A. then I wanated to compare these two sample sets with kstest. but It showed me they don't have same distribution.

 

here is my simple code:

 

clc
clear all
close all

n_s = 1000;
mother_random_variable = lognrnd(0.3,0.5,[1,100000]);               %data lognormal
S = mother_random_variable(randi(numel(mother_random_variable),1,n_s))          %sample

S_y = [S]';                             %selected data 

S_mean=mean(S_y);               %mean sample
S_var=std(S_y);                 %variance sammple
test_cdf = [S_y,cdf('Lognormal',S_y,S_var,S_mean)];        %make cdf 
kstest(S_y,'CDF',test_cdf)                  %ktest
plot(sort(S_y),logncdf(sort(S_y)),'r--')
hold on
cdfplot(S_y)

they have same distribution and ITs srange result . I found more strage result when I compare my data set with itself, Its result shows me they don't have same distribution.

clc
clear all
close all

n_s = 1000;
mother_random_variable = lognrnd(0.3,0.5,[1,100000]); %data
S=mother_random_variable; % I named data with S for simpler code
S_y = [S]';     %selected data 
S_mean=mean(S_y);
S_var=std(S_y);
test_cdf = [S_y,cdf('Lognormal',S_y,S_var,S_mean)];
kstest(S_y,'CDF',test_cdf)
plot(sort(S_y),logncdf(sort(S_y)),'r--')
hold on
cdfplot(S_y)

DO you have any Idea.

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Having only looked at your 2nd block of code, I have some comments and suggestions.

 

1) The parameters for a lognormal distribution are mean and standard deviation in that order. In your code, you're entering them in reverse when you call the cdf() function and this is creating a totally different distribution than you intend to do.

 

 

y = cdf('Lognormal', S_y, S_var, S_mean);    % your code, incorrect
y = cdf('Lognormal', S_y, S_mean, S_var);    % correct

2) This is just a suggestion but it's a bit cleaner to use the makedist() function rather than entering the parameters manually into cdf().

doc cdf

pd = makedist('Lognormal', 'mu', S_mean, 'sigma', S_var); 
y = cdf(pd, S_y);   % instead of cdf('Lognormal', S_y, S_mean, S_var)                  

3) " when I compare my data set with itself, Its result shows me they don't have same distribution." But you aren't comparing your data with itself. You're comparing your data with the results of the cumulative distribution function of your data. The plot below shows the distribution of values from your data (top) and the distribution of values from the CDF. Clearly those distributions differ and the kstest() correctly rejects the null hypothesis.

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